PottersWheel Function Reference

The Application Programming Interface

Updated: 2010-02-07 21:32:34 (350 functions)

Function details also available from command line: help FunctionName

All functions within a single file.

PottersWheel
pc
pe
pw
pwAdaptFitToLevelOfHistoryStorage
pwAddA
pwAddC
pwAddConstraint
pwAddData
pwAddDataFromLibrary
pwAddDynamicalParameters
pwAddE
pwAddFunction
pwAddInstructions
pwAddK
pwAddModel
pwAddModelFromLibrary
pwAddModelsFromFolder
pwAddODE
pwAddObservations
pwAddP
pwAddR
pwAddRepository
pwAddRule
pwAddS
pwAddStartValues
pwAddU
pwAddV
pwAddX
pwAddY
pwAddZ
pwAnalysisOfFits
pwAnalysisOfFitsForDerivedParameters
pwAnalysisOfResiduals
pwAnalysisOfStandardDeviations
pwAppend
pwAppendFitHistoryOfRepository
pwArrange
pwAutoResetQRNG
pwBenchmark
pwCalcFitGroupID
pwCalculateConstraints
pwCalculateDerivedParameters
pwCalculateResiduals
pwCharacteristicsOfSystemResponse
pwCheckForStiffness
pwCheckSystem
pwCleanUp
pwClear
pwClearFitHistory
pwCloseFigures
pwCombine
pwCompareIntegrators
pwCompareReactionNetworks
pwCompile
pwCompleteModel
pwConfidenceIntervals
pwConfiguration
pwConvertCustomFormatToPW
pwCopyDataFromLibrary
pwCopyModelFromLibrary
pwDataAndFits
pwDelete
pwDeleteModelDataConnections
pwDeleteOutliers
pwDeleteStimuli
pwDesigner
pwDesignerApplyCellDesignerLayout
pwDesignerApplyPottersWheelLayout
pwDesignerArrange
pwDesignerAutomaticLayout
pwDesignerChangeNetworkSize
pwDesignerChangeSpeciesSize
pwDesignerGetLimits
pwDesignerLengthOfReactionLines
pwDesignerNumberOfSpeciesOverlaps
pwDesignerOptimizePositions
pwDesignerRun
pwDesignerShapeOfSpeciesClass
pwDesignerTransformPositions
pwDesignerUpdate
pwDisturb
pwDisturbedParameters
pwDoseResponse
pwDraw
pwDuplicate
pwEdit
pwEnsureLocalMexFiles
pwEnsureValidConfig
pwEqualizer
pwExcelToTextFile
pwExportCouplesToLatex
pwExportCouplesToMatlab
pwExportCouplesToPWODE
pwExportCouplesToSBML
pwExportCouplesToTXT
pwExportCouplesToXPP
pwExportModelToMathematica
pwExportModelToSBML
pwExportModelToSbToolbox2
pwExtractCellDesignerInformation
pwF1
pwF2
pwF3
pwF4
pwF5
pwFastIntegration
pwFastPlotting
pwFit
pwFitBoost
pwFitDeviation
pwFitDynamicParameters
pwFitHistory
pwFitHistoryAppendManualFit
pwFitHistoryClear
pwFitHistoryDeleteFits
pwFitHistoryGetFitGroups
pwFitHistoryGetFits
pwFitHistoryMergeFitSequences
pwFitScalingParameters
pwFitSequence
pwFitSequenceAnalysis
pwFitSequencePlots
pwFitSequenceResults
pwFitSettings
pwFitStartValues
pwFixParameters
pwForceTimeDependentView
pwForcedCompilation
pwGetA
pwGetAssemblyState
pwGetBestFit
pwGetC
pwGetChisqAndN
pwGetConfig
pwGetConstraint
pwGetCurrentDataSet
pwGetCurrentDrivingFunction
pwGetDataSet
pwGetDefaultConfig
pwGetDrivingFunction
pwGetDrivingFunctionCont
pwGetDrivingFunctionPulse
pwGetDrivingFunctionsFromFile
pwGetE
pwGetEmptyModel
pwGetFieldtype
pwGetFitParameterValuesByID
pwGetFitParameters
pwGetFitsOfCurrentSelectedCouple
pwGetFitsOfSelectedCouple
pwGetFixedParameters
pwGetIDs
pwGetInfluencedSpecies
pwGetIntegrator
pwGetIntegratorName
pwGetInvolvedSpecies
pwGetK
pwGetKDialog
pwGetListOfParameters
pwGetModelState
pwGetNeighbourSpecies
pwGetNumberOfCouples
pwGetNumberOfDataSets
pwGetNumberOfFittedCouples
pwGetNumberOfFittedDataPoints
pwGetNumberOfTrajectoryFigures
pwGetP
pwGetParameterValues
pwGetPlottingData
pwGetPlottingData2
pwGetQRNGIndex
pwGetR
pwGetReactionAutoID
pwGetRule
pwGetS
pwGetSelectedModel
pwGetStimulusField
pwGetU
pwGetUDialog
pwGetV
pwGetX
pwGetXDialog
pwGetY
pwGetZ
pwGoodnessOfFit
pwGraph
pwIDSO
pwIncludeModel
pwInfo
pwInfo3
pwInfoPlotsFitting
pwInitialize
pwInputDesigner
pwInputDesignerGUI
pwInputFunctionToString
pwInstall
pwInstallSundialsTB
pwIntegrate
pwIntegrationTimeAlongFitTrajectory
pwLRT
pwLicense
pwLoadConfigFromMFunction
pwLoadConfigFromMatFile
pwLoadRepository
pwLogChangeFitParameter
pwMaxValues
pwModelDesigner
pwModelInfo
pwMota
pwNewModel
pwODEsToReactions
pwOpenODE
pwOverwrite
pwPLE
pwPLEInit
pwPLEPlot
pwPLEPlotMulti
pwPLEPlotRelations
pwPLEPrint
pwPLETrajectories
pwParseAndShow
pwPause
pwPlayRingIn
pwPlayTada
pwPlot
pwPlotMultipleParameterSettings
pwPlugInMOTA
pwPlugInMOTASaveResult
pwPropertiesOfDataFile
pwQuasiRandomNumbersExtended
pwRandomizedParameters
pwReactionToString
pwReduceFitHistorySize
pwReload
pwReportAppendComments
pwReportAppendCoupleAndStimuliInfo
pwReportAppendGraphsAndReactions
pwReportAppendGraphsAndReactionsForSubnetworks
pwReportAppendLastStep
pwReportAppendObservables
pwReportClear
pwReportGUI
pwReportGenerate
pwReportNew
pwReportOnModelStructure
pwReset
pwResetOverwriteColor
pwRestoreOriginalData
pwRotate3DFigure
pwSBML2PW
pwSaveConfigToMFunction
pwSaveConfigToMatFile
pwSaveDataSets
pwSaveDynamicalParameters
pwSaveFiguresOfLastStep
pwSaveFrames
pwSaveFramesToAnimatedGif
pwSaveFramesToAvi
pwSaveInstructions
pwSaveModel
pwSaveModelKeepingCustomStructure
pwSaveOriginalDataFile
pwSaveOriginalModel
pwSavePlottingData
pwSaveRepository
pwSaveSelectedModelsWithFittedParValues
pwSaveStartValues
pwSaveState
pwScale
pwScaleAndMergeDataSets
pwScatterPlots
pwSearch
pwSelect
pwSelectDataFile
pwSelectModelFile
pwSensitivityAddPair
pwSensitivityAnalysis1D
pwSensitivityAnalysis2D
pwSensitivityAnalysis3D
pwSensitivityAnalysisDetailed
pwSensitivityAnalysisDetailedGUI
pwSetConfig
pwSetCurrentDataSet
pwSetCurrentDrivingFunction
pwSetErrorLevel
pwSetFitLimitsAroundCurrentValues
pwSetFitLimitsAroundTrueValues
pwSetFitParameterValuesByID
pwSetFitSettings
pwSetFixedParameters
pwSetIntegrationOptions
pwSetIntegrationStartTime
pwSetIntegrator
pwSetLogFitting
pwSetOptimizationUserFunction
pwSetOptimizationWeights
pwSetOptimizer
pwSetParameterValuesByID
pwSetParsForFitToDefaultValues
pwSetPlotStartTime
pwSetPlottingState
pwSetPlottingUserFunction
pwSetQRNGIndex
pwSetReferencesFile
pwSetResetValues
pwSetStimulusDependentView
pwSetStimulusField
pwSetUsedDataSet
pwSetY
pwShortcut
pwShowChisqLandscape
pwShowChisqLandscape3D
pwShowDataFromLibrary
pwShowFigure
pwShowFigures
pwShowFitting
pwShowGraph
pwShowGraphAsPNG
pwShowGraphForSubnetwork
pwShowHelp
pwShowModelsFromLibrary
pwShowODE
pwShowShortcuts
pwSim
pwSimulateNewRealization
pwSortFits
pwSplitStimuli
pwSubtractAllY
pwSubtractR
pwSubtractY
pwSubtractZ
pwThresholdCrossing
pwTouch
pwTrajectoriesOfManyInputSettings
pwTrajectoriesOfManyParameterSettings
pwTutorial_ODE_based_models
pwTutorial_Rule_based_modeling
pwTutorial_Using_the_Parallel_Computing_Toolbox
pwUndo
pwUnselect
pwUpdateModelLibrary
pwUpdateRepository
pwUseCurrentParametersAsResetParameters
pwUseDataSetSettingsForSim
pwUseFitOfLastFitSequence
pwUserFunctionFitSum
pwUserFunctionPlotSum
pwValuesAtTimePoint
pwVersion