pwCompareReactionNetworks

 

 pwCompareReactionNetworks(model1, model2, ignoreParameterIDs,
                           ignoreRateSignatures, orderComplexes)

 Compares the reaction networks of two models:
 Collects equal reactions and shows reactions
 which are present only in one network.

Arguments for pwCompareReactionNetworks

 model1                By default the first selected model.
                      Else the index of the first model in the model repository list.
 model2               By default the second selected model
                      Else the index of the second model in the model repository list.
 ignoreParameterIDs   If true, the number and names of parameters are ignored.
                      This is useful, if only the model structure should be compared.
                      Default: false
 ignoreRateSignatures If true, the kinetic rate of each reaction is ignored.
                      Default: false
 orderComplexes       Each complex is ordered alphabetically by the
                      involved basic species, e.g. pC_qA is reordered to qA_pC.
                      A prerequisite is use of the PottersWheel naming convention
                      as described in pwAddX.
                      Default: false

Description

 
 This function is also useful to identify whether a model imported or
 created in two different ways is identical.

 By setting ignoreParameterIDs, ignoreRateSignatures, and orderComplexes
 to true, the model structure is compared in the least strict manner.

Example

 
 % We compare example models M1 and M2
 pwAddModel('M1');
 pwAddModel('M2');
 pwCompareReactionNetworks

 % Output (reactants -> products, rate signature, parameters):
 1 common reaction, 1 only in first network, 1 only in second network.
 1 reactions only in M1:
 pR --> R, k1*r1, R_deact
 1 reaction only in M2:
 pR --> iR, k1*r1, R_int

See also

pwAddR